Package index

Functions to compute MPQr distances and related quantities

get_mpq_distances()

Compute MPQr distances for a range of values of r

get_null_mean_and_variance()

Compute null distribution statistics for the MPQr distance

Built-in functions for animated plots

plot_dist_to_reference_samples()

Makes an animated plot showing the the distances between each sample and a set of reference samples

plot_all_pairs()

Creates an animated plot of MPQ distances against some other measure of distance between sites

Helper functions for custom animated plots

make_animation_df()

Set up a data frame to make a plotly animation

get_avg_distances_to_set()

Get average distance to set

Data

gentry

Gentry forest transect dataset as a phyloseq object

small_otutab

Subsampled OTU Table from the Gentry Dataset

small_tree

Subsampled Phylogenetic Tree from the Gentry Dataset